##FastQC	0.10.0
>>Basic Statistics	pass
#Measure	Value	
Filename	lane3_Index18_1.fq	
File type	Conventional base calls	
Encoding	Illumina 1.5	
Total Sequences	18872182	
Filtered Sequences	0	
Sequence length	90	
%GC	49	
>>END_MODULE
>>Per base sequence quality	pass
#Base	Mean	Median	Lower Quartile	Upper Quartile	10th Percentile	90th Percentile
1	32.10724848880749	33.0	31.0	34.0	30.0	34.0
2	32.37775515306073	34.0	31.0	34.0	31.0	34.0
3	32.409703234104036	34.0	31.0	34.0	31.0	34.0
4	36.05664681487281	37.0	35.0	37.0	35.0	37.0
5	35.94298597798601	37.0	35.0	37.0	35.0	37.0
6	35.93137094587155	37.0	35.0	37.0	35.0	37.0
7	35.90782464899925	37.0	35.0	37.0	35.0	37.0
8	35.8564595233344	37.0	35.0	37.0	35.0	37.0
9	37.586489416009236	39.0	37.0	39.0	35.0	39.0
10-14	37.81892564410411	39.2	37.2	39.4	35.0	39.4
15-19	38.765031865419694	40.0	38.0	41.0	34.4	41.0
20-24	38.59442852977997	40.0	38.0	41.0	34.0	41.0
25-29	38.254826686177566	40.0	38.0	41.0	33.6	41.0
30-34	38.198871958737996	40.0	38.0	41.0	33.2	41.0
35-39	37.89257237981279	40.0	37.0	41.0	33.0	41.0
40-44	37.802657519941256	40.0	37.0	41.0	33.0	41.0
45-49	37.46402835665743	39.4	35.8	41.0	31.8	41.0
50-54	36.884073246008334	38.8	35.0	40.6	31.0	41.0
55-59	36.18042165977416	37.8	34.8	40.0	30.0	41.0
60-64	35.39692506144759	36.6	34.0	39.8	29.0	41.0
65-69	34.461258862382735	35.4	33.2	38.8	27.8	40.6
70-74	33.45042224582192	35.0	32.6	37.2	26.4	39.6
75-79	32.445934116150426	34.6	31.8	36.0	26.0	38.6
80-84	31.82086717900453	34.6	31.6	35.0	24.8	36.8
85-89	30.699826093241363	34.0	31.0	35.0	21.4	36.0
90	29.71811463030613	34.0	31.0	35.0	2.0	35.0
>>END_MODULE
>>Per sequence quality scores	pass
#Quality	Count
10	4.0
11	11.0
12	116.0
13	848.0
14	3782.0
15	10355.0
16	18468.0
17	25831.0
18	33193.0
19	40506.0
20	48638.0
21	57341.0
22	66932.0
23	79521.0
24	96479.0
25	120431.0
26	154044.0
27	199210.0
28	256957.0
29	326442.0
30	411198.0
31	516408.0
32	648540.0
33	835802.0
34	1127833.0
35	1622652.0
36	2515981.0
37	3660798.0
38	3985267.0
39	1978671.0
40	29923.0
>>END_MODULE
>>Per base sequence content	fail
#Base	G	A	T	C
1	24.376699921375817	12.61323868972721	9.670583571602924	53.339477817294046
2	21.712619134342813	18.956069838665186	36.45727346207238	22.874037564919625
3	25.568723319857767	21.49241142333197	22.579148505456338	30.359716751353922
4	27.81743520701528	27.475815992024664	19.27064395627384	25.436104844686213
5	29.453144969883695	29.613100095336158	21.40359284635448	19.530162088425666
6	24.40933433134547	32.42652598411779	21.886499398956623	21.27764028558012
7	21.766274827150355	18.682651534411864	37.117366714670304	22.43370692376748
8	21.562567592872938	21.91150445666537	29.33564862822963	27.19027932223206
9	21.623493245243182	20.809273670633317	31.73837556250782	25.828857521615678
10-14	24.826781556049006	25.993067468298047	24.442784623420863	24.737366352232083
15-19	25.25204451716288	24.94371451059554	24.773902667958588	25.03033830428299
20-24	25.021862336851136	25.17166695403849	25.17194249186448	24.63452821724589
25-29	24.896735509448416	25.167593606539086	25.120177755077215	24.815493128935284
30-34	24.996732417329206	25.069937078963907	25.023170878332472	24.910159625374416
35-39	24.997958538681026	25.243765848747834	24.97199528396735	24.786280328603787
40-44	24.946882265945156	25.040812021448634	25.177793224008948	24.834512488597266
45-49	24.871191418441686	25.108435244178008	25.074391719590643	24.945981617789663
50-54	24.943809184783635	25.19165452120433	25.09031258209482	24.774223711917212
55-59	24.95971460015804	25.11091321705124	25.043124586587812	24.886247596202914
60-64	24.859233703458298	25.134356327693713	25.155624685932988	24.850785282914998
65-69	24.915096280488868	25.23681811752428	25.137084867327246	24.711000734659606
70-74	24.95155332053433	25.17306549027069	25.03614133098108	24.839239858213897
75-79	24.962591499728116	25.12325140947548	25.106887409512357	24.80726968128405
80-84	24.85733973386404	25.268917784929506	25.125314594631575	24.748427886574873
85-89	24.980371798955293	25.238841439902682	25.031795910583472	24.74899085055856
90	24.68100087366825	25.35065423381499	25.23233704349138	24.73600784902538
>>END_MODULE
>>Per base GC content	fail
#Base	%GC
1	77.71617773866987
2	44.58665669926244
3	55.928440071211696
4	53.2535400517015
5	48.98330705830936
6	45.68697461692559
7	44.199981750917836
8	48.75284691510499
9	47.45235076685886
10-14	49.564147908281086
15-19	50.28238282144587
20-24	49.65639055409703
25-29	49.7122286383837
30-34	49.90689204270362
35-39	49.78423886728481
40-44	49.78139475454242
45-49	49.81717303623135
50-54	49.71803289670085
55-59	49.84596219636096
60-64	49.7100189863733
65-69	49.62609701514848
70-74	49.790793178748224
75-79	49.76986118101217
80-84	49.60576762043892
85-89	49.72936264951385
90	49.41700872269363
>>END_MODULE
>>Per sequence GC content	pass
#GC Content	Count
0	2.0
1	2.0
2	2.5
3	3.5
4	3.5
5	6.5
6	7.5
7	5.5
8	13.5
9	28.5
10	36.0
11	55.0
12	83.5
13	140.5
14	256.5
15	419.0
16	748.5
17	1313.0
18	2382.0
19	4412.0
20	5702.0
21	7628.0
22	12827.0
23	20962.5
24	32106.5
25	47753.5
26	68736.0
27	95580.0
28	125733.0
29	158651.0
30	176643.0
31	193634.5
32	230380.5
33	271869.0
34	317397.0
35	361189.5
36	404438.5
37	454975.0
38	499547.5
39	535120.5
40	553407.0
41	565070.0
42	590117.0
43	615547.5
44	630506.5
45	635346.5
46	636336.5
47	634837.0
48	637781.5
49	641378.0
50	641468.0
51	636069.0
52	631293.5
53	625146.5
54	623217.0
55	627214.5
56	622141.0
57	612051.5
58	595063.5
59	572421.0
60	560907.0
61	546397.0
62	516621.5
63	479636.5
64	433413.0
65	384801.5
66	335253.5
67	284437.5
68	238108.0
69	193808.5
70	170463.0
71	150412.5
72	113799.0
73	83002.5
74	56577.0
75	35334.5
76	20609.0
77	11135.0
78	5193.0
79	2147.0
80	1244.0
81	869.0
82	358.5
83	154.5
84	65.0
85	38.0
86	22.0
87	14.0
88	10.0
89	5.0
90	6.0
91	4.5
92	2.0
93	1.0
94	0.5
95	0.0
96	0.0
97	0.0
98	0.0
99	0.0
100	0.0
>>END_MODULE
>>Per base N content	pass
#Base	N-Count
1	0.22980914448578338
2	0.0
3	0.0
4	0.0
5	7.418326084392361E-5
6	0.0
7	0.0
8	0.0
9	0.0
10-14	0.0
15-19	0.0
20-24	0.0
25-29	6.464541302113344E-5
30-34	0.0022943822818156374
35-39	0.00474878845488031
40-44	0.006737959606366661
45-49	0.002426852390465501
50-54	0.015869919016253658
55-59	0.003077545564153631
60-64	8.160158692831597E-5
65-69	2.1513145644737848E-4
70-74	0.003779107259563309
75-79	0.0014200795647265378
80-84	2.0453384775538937E-4
85-89	5.351792389454489E-4
90	1.589641303798363E-4
>>END_MODULE
>>Sequence Length Distribution	pass
#Length	Count
90	1.8872182E7
>>END_MODULE
>>Sequence Duplication Levels	fail
#Total Duplicate Percentage	53.34681806634679
#Duplication Level	Relative count
1	100.0
2	30.416200055479642
3	15.863068024205562
4	9.50140240206302
5	6.560981373223881
6	4.909948321740828
7	3.7048072082438637
8	2.968160849865924
9	2.445213853472101
10++	29.11037366566324
>>END_MODULE
>>Overrepresented sequences	pass
>>END_MODULE
>>Kmer Content	warn
#Sequence	Count	Obs/Exp Overall	Obs/Exp Max	Max Obs/Exp Position
CCAGG	4121835	2.6100187	5.2507753	1
CCTGG	4123785	2.5981317	5.919491	1
GAAGA	3964905	2.5418115	5.064073	2
CTTCT	4092565	2.5401316	6.051903	1
AAGAA	3950800	2.5265694	5.1718373	2
CTGGA	3867490	2.4517326	9.101237	1
TCCAG	3763440	2.3652978	5.507831	2
CTGCT	3747055	2.3431654	5.247127	1
CTCCT	3751915	2.3260698	7.7732215	1
CTGGG	3540115	2.2497056	8.49859	1
CAGGA	3523675	2.2450585	5.540548	1
CTTCA	3558545	2.2198362	6.1647325	1
CTCCA	3487055	2.1727834	7.9325156	1
CCCAG	3415435	2.1441538	7.0579214	1
CAGAA	3248420	2.0646174	5.057227	1
CTCTG	3211960	2.0085518	6.6916375	1
CTGGC	3015300	1.8997465	5.435364	1
TGGAA	2908730	1.8553512	5.358682	2
CTGAA	2905855	1.8376106	5.9243665	1
CTTTT	2907235	1.8064736	5.2934036	1
CTCAG	2748340	1.727314	6.559668	1
CTGAG	2720475	1.7246011	5.1580873	1
CTTTG	2720825	1.7033517	5.439495	1
CTGGT	2665860	1.6814865	5.232473	1
CTTGG	2590350	1.6338586	5.626627	1
CTCCC	2487480	1.5404174	5.002196	1
>>END_MODULE
